2CS1 Dna Binding Protein date May 20, 2005
title Solution Structure Of The Hmg Domain Of Human Dna Mismatch Repair Protein
authors C.Kurosaki, F.Hayashi, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Pms1 Protein Homolog 1
Chain: A
Fragment: Hmg_box Domain
Synonym: Dna Mismatch Repair Protein Pms1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pms1, Pmsl1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050111-24
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (487 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2CS1
  • Retrieve 2CS1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CS1 from S2C, [Save to disk]
  • View 2CS1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CS1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CS1, from MSDmotif at EBI
  • Fold representative 2cs1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cs1] [2cs1_A]
  • SWISS-PROT database: [P54277]
  • Domain organization of [PMS1_HUMAN] by SWISSPFAM
  • Domain found in 2CS1: [HMG ] by SMART
  • Alignments of the sequence of 2CS1 with the sequences similar proteins can be viewed for 2CS1's classification [PMS1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PMS1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2CS1
  • Community annotation for 2CS1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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