2CTP Chaperone date May 24, 2005
title Solution Structure Of J-Domain From Human Dnaj Subfamily B M
authors N.Kobayashi, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, R Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dnaj Homolog Subfamily B Member 12
Chain: A
Fragment: J-Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnajb12
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040315-96
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (385 Kb) [Save to disk]
  • Biological Unit Coordinates (2ctp.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2CTP
  • Retrieve 2CTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CTP from S2C, [Save to disk]
    • View 2CTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CTP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CTP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ctp] [2ctp_A]
  • SWISS-PROT database: [Q9NXW2]
  • Belongs to the polyoma virus sv40 er penitration channel (vpec) family according to TCDB.
  • Domain organization of [DJB12_HUMAN] by SWISSPFAM
  • Domain found in 2CTP: [DnaJ ] by SMART
    • Other resources with information on 2CTP
  • Community annotation for 2CTP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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