2CUP Metal Binding Protein date May 27, 2005
title Solution Structure Of The Skeletal Muscle Lim-Protein 1
authors T.N.Niraula, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Skeletal Muscle Lim-Protein 1
Chain: A
Fragment: One And A Half Lim Domain
Synonym: Slim 1, Slim, Four And A Half Lim Domains Protein 1, Fhl-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fhl 1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: 040816-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (512 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2CUP
  • CSU: Contacts of Structural Units for 2CUP
  • Original NMR restraints for 2CUP from PDB
  • Retrieve 2CUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CUP from S2C, [Save to disk]
  • View 2CUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CUP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CUP, from MSDmotif at EBI
  • Fold representative 2cup from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cup] [2cup_A]
  • SWISS-PROT database: [Q13642]
  • Domain organization of [FHL1_HUMAN] by SWISSPFAM
  • Domain found in 2CUP: [LIM ] by SMART
  • Alignments of the sequence of 2CUP with the sequences similar proteins can be viewed for 2CUP's classification [FHL1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FHL1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2CUP
  • Community annotation for 2CUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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