2CUZ Ligase date May 31, 2005
title Glutamyl-Trna Synthetase From Thermus Thermophilus In Comple Glutamate
authors S.Sekine, S.Yokoyama, Riken Structural Genomicsproteomics Ini (Rsgi)
compound source
Molecule: Glutamyl-Trna Synthetase
Chain: A
Synonym: Glutamate--Trna Ligase, Glurs
Ec: 6.1.1.17
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk7
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.152 84.040 83.661 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand GLU enzyme Ligase E.C.6.1.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase., Sekine S, Shichiri M, Bernier S, Chenevert R, Lapointe J, Yokoyama S, Structure. 2006 Dec;14(12):1791-9. PMID:17161369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2cuz.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2CUZ
  • CSU: Contacts of Structural Units for 2CUZ
  • Likely Quarternary Molecular Structure file(s) for 2CUZ
  • Structure Factors (333 Kb)
  • Retrieve 2CUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CUZ from S2C, [Save to disk]
  • Re-refined 2cuz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CUZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CUZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cuz_A] [2cuz]
  • SWISS-PROT database: [P27000]
  • Domain organization of [SYE_THET8] by SWISSPFAM
  • Other resources with information on 2CUZ
  • Community annotation for 2CUZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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