2CVB Structural Genomics, Unknown Function date Jun 01, 2005
title Crystal Structure Of A Thioredoxin-Like Protein From Thermus Thermophilus Hb8
authors A.Ebihara, S.Yokoyama, S.Kuramitsu, Riken Structural Genomicsp Initiative (Rsgi)
compound source
Molecule: Probable Thiol-Disulfide Isomerasethioredoxin
Chain: A
Synonym: Thioredoxin-Like Protein
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 41 21 2
R_factor 0.212 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.420 73.420 96.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • antioxidant activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2cvb.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2CVB
  • CSU: Contacts of Structural Units for 2CVB
  • Likely Quarternary Molecular Structure file(s) for 2CVB
  • Structure Factors (185 Kb)
  • Retrieve 2CVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CVB from S2C, [Save to disk]
  • Re-refined 2cvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CVB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CVB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cvb_A] [2cvb]
  • SWISS-PROT database: [Q5SKQ0]
  • Domain organization of [Q5SKQ0_THET8] by SWISSPFAM
    • Other resources with information on 2CVB
  • Community annotation for 2CVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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