2CW9 Protein Transport date Jun 17, 2005
title Crystal Structure Of Human Tim44 C-Terminal Domain
authors N.Handa, S.Kishishita, S.Morita, Y.Kinoshita, Y.Nagano, H.Uda, T.Terada, T.Uchikubo, C.Takemoto, Z.Jin, J.Chrzas, L.Chen, Z. J.Liu, B.C.Wang, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Translocase Of Inner Mitochondrial Membrane
Chain: A
Fragment: C-Terminal Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell Free
symmetry Space Group: P 65 2 2
R_factor 0.218 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.119 108.119 114.056 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PE, MSE enzyme
note 2CW9 is a representative structure
Primary referenceStructure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form., Handa N, Kishishita S, Morita S, Akasaka R, Jin Z, Chrzas J, Chen L, Liu ZJ, Wang BC, Sugano S, Tanaka A, Terada T, Shirouzu M, Yokoyama S, Acta Crystallogr D Biol Crystallogr. 2007 Dec;63(Pt 12):1225-34. Epub 2007, Nov 16. PMID:18084070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2cw9.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2CW9
  • CSU: Contacts of Structural Units for 2CW9
  • Likely Quarternary Molecular Structure file(s) for 2CW9
  • Structure Factors (252 Kb)
  • Retrieve 2CW9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CW9 from S2C, [Save to disk]
  • Re-refined 2cw9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CW9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CW9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CW9, from MSDmotif at EBI
  • Fold representative 2cw9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cw9] [2cw9_A]
  • SWISS-PROT database: [O43615]
  • Domain organization of [TIM44_HUMAN] by SWISSPFAM
  • Domain found in 2CW9: [Tim44 ] by SMART
  • Other resources with information on 2CW9
  • Community annotation for 2CW9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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