2CYD	Hydrolase	date	Jul 06, 2005
title	Crystal Structure Of Lithium Bound Rotor Ring Of The V-Atpas Enterococcus Hirae
authors	T.Murata, I.Yamato, Y.Kakinuma, M.Shirouzu, J.E.Walker, S.Yokoyam Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: V-Type Sodium Atp Synthase Subunit K Chain: A, B, C, D, E, F, G, H, I, J Synonym: Na+, - Translocating Atpase Subunit K, Sodium Atpa Proteolipid Component; Ec: 3.6.3.14 Engineered: Yes		Organism_scientific: Enterococcus Hirae Organism_taxid: 1354 Expression_system: Enterococcus Hirae Expression_system_taxid: 1354 Expression_system_strain: 25d Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.648 125.779 210.196 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	LHG, LI, UMQ	enzyme	Hydrolase E.C.3.6.3.14 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk] Biological Unit Coordinates (2cyd.pdb1.gz) 254 Kb LPC: Ligand-Protein Contacts for 2CYD CSU: Contacts of Structural Units for 2CYD Likely Quarternary Molecular Structure file(s) for 2CYD Structure Factors (619 Kb) Retrieve 2CYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CYD from S2C, [Save to disk] Re-refined 2cyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CYD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CYD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cyd_C] [2cyd_I] [2cyd_D] [2cyd_G] [2cyd] [2cyd_H] [2cyd_J] [2cyd_F] [2cyd_A] [2cyd_E] [2cyd_B] SWISS-PROT database: [P43457] Belongs to the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily according to TCDB. Domain organization of [NTPK_ENTHR] by SWISSPFAM

Other resources with information on 2CYD

Community annotation for 2CYD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---