2CZ5	Lyase	date	Jul 11, 2005
title	Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase Fr Pyrococcus Horikoshii Ot3
authors	R.Arai, K.Ito, T.Kamo-Uchikubo, M.Shirouzu, S.Yokoyama, Riken Str Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Orotidine 5'-Phosphate Decarboxylase Chain: A, B Synonym: Omp Decarboxylase, Ompdcase, Ompdecase Ec: 4.1.1.23 Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 53953 Gene: Pyrf, Ph0731 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.427 59.909 152.519 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	CIT, GOL	enzyme	Lyase E.C.4.1.1.23 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (2cz5.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 2CZ5 CSU: Contacts of Structural Units for 2CZ5 Likely Quarternary Molecular Structure file(s) for 2CZ5 Structure Factors (498 Kb) Retrieve 2CZ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CZ5 from S2C, [Save to disk] Re-refined 2cz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CZ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CZ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CZ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cz5_B] [2cz5_A] [2cz5] SWISS-PROT database: [O58462] Domain organization of [PYRF_PYRHO] by SWISSPFAM Domain found in 2CZ5: [OMPdecase ] by SMART

Other resources with information on 2CZ5

Community annotation for 2CZ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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