2CZJ Rna Binding Protein Rna date Jul 13, 2005
title Crystal Structure Of The Trna Domain Of Tmrna From Thermus Thermophilus Hb8
authors Y.Bessho, R.Shibata, S.Sekine, K.Murayama, M.Shirouzu, S.Yokoyama Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ssra-Binding Protein
Chain: A, C, E, G
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11

Molecule: Tmrna (63-Mer)
Chain: B, D, F, H
Engineered: Yes

Synthetic: Yes
Other_details: Total 63nt Of Rna Was Generated By Binding T Trascript (41nt) And Chemically Synthesized Rna (22nt).
symmetry Space Group: P 1 21 1
R_factor 0.255 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.776 67.957 178.662 90.00 90.07 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand 5MU, PSU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceStructural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA., Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S, Proc Natl Acad Sci U S A. 2007 May 15;104(20):8293-8. Epub 2007 May 8. PMID:17488812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (2czj.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2czj.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (2czj.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (2czj.pdb4.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2CZJ
  • CSU: Contacts of Structural Units for 2CZJ
  • Likely Quarternary Molecular Structure file(s) for 2CZJ
  • Retrieve 2CZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CZJ from S2C, [Save to disk]
  • View 2CZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CZJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CZJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2czj_B] [2czj] [2czj_H] [2czj_C] [2czj_F] [2czj_G] [2czj_A] [2czj_E] [2czj_D]
  • SWISS-PROT database: [Q8RR57]
  • Domain organization of [SSRP_THET8] by SWISSPFAM
  • Other resources with information on 2CZJ
  • Community annotation for 2CZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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