2CZY Gene Regulation date Jul 20, 2005
title Solution Structure Of The Nrsfrest-Msin3b Pah1 Complex
authors M.Nomura, H.Uda-Tochio, K.Murai, N.Mori, Y.Nishimura
compound source
Molecule: Paired Amphipathic Helix Protein Sin3b
Chain: A
Fragment: Pah1 Domain (Residues 31-107)
Synonym: Sin3b, Transcriptional Corepressor Sin3b, Histone Deacetylase Complex Subunit Sin3b;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Sin3b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Transcription Factor Rest (Version 3)
Chain: B
Fragment: Sin3 Interaction Domain (Residues 43-57)
Synonym: Nrsfrest
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix., Nomura M, Uda-Tochio H, Murai K, Mori N, Nishimura Y, J Mol Biol 2005 Dec 9;354(4):903-915. Epub 2005 Oct 26. PMID:16288918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2CZY
  • Original NMR restraints for 2CZY from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2CZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CZY from S2C, [Save to disk]
  • View 2CZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CZY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CZY, from MSDmotif at EBI
  • Fold representative 2czy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2czy_A] [2czy_B] [2czy]
  • SWISS-PROT database: [Q13127] [Q62141]
  • Domain organization of [REST_HUMAN] [SIN3B_MOUSE] by SWISSPFAM
  • Other resources with information on 2CZY
  • Community annotation for 2CZY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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