2D10 Cell Adhesion date Aug 11, 2005
title Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide
authors S.Terawaki, R.Maesaki, T.Hakoshima
compound source
Molecule: Radixin
Chain: A, B, C, D
Fragment: Ferm Domain (Residues 3-312)
Synonym: Esp10
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-3

Molecule: Ezrin-Radixin-Moesin Binding Phosphoprotein 50
Chain: E, F, G, H
Fragment: Residues 331-358
Synonym: Sodium-Hydrogen Exchanger Regulatory Factor 1, Ebp50, Na+, H+, Exchange Regulatory Cofactor Nhe-Rf, Nherf-1, Regulatory Cofactor Of Na+, H+, Exchanger, Solute Carrier Family 9 Isoform 3 Regulatory Factor 1;
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.388 146.277 177.763 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, E, H, G


Primary referenceStructural basis for NHERF recognition by ERM proteins., Terawaki S, Maesaki R, Hakoshima T, Structure. 2006 Apr;14(4):777-89. PMID:16615918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (2d10.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2d10.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (2d10.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (2d10.pdb4.gz) 58 Kb
  • CSU: Contacts of Structural Units for 2D10
  • Likely Quarternary Molecular Structure file(s) for 2D10
  • Structure Factors (533 Kb)
  • Retrieve 2D10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D10 from S2C, [Save to disk]
  • Re-refined 2d10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2D10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D10, from MSDmotif at EBI
  • Fold representative 2d10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d10_G] [2d10_D] [2d10] [2d10_A] [2d10_F] [2d10_B] [2d10_E] [2d10_H] [2d10_C]
  • SWISS-PROT database: [O14745] [P26043]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [NHRF1_HUMAN] [RADI_MOUSE] by SWISSPFAM
  • Domains found in 2D10: [B41] [FERM_C ] by SMART
  • Other resources with information on 2D10
  • Community annotation for 2D10 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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