2D10	Cell Adhesion	date	Aug 11, 2005
title	Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide
authors	S.Terawaki, R.Maesaki, T.Hakoshima
compound		source
Molecule: Radixin Chain: A, B, C, D Fragment: Ferm Domain (Residues 3-312) Synonym: Esp10 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t-3
Molecule: Ezrin-Radixin-Moesin Binding Phosphoprotein 50 Chain: E, F, G, H Fragment: Residues 331-358 Synonym: Sodium-Hydrogen Exchanger Regulatory Factor 1, Ebp50, Na+, H+, Exchange Regulatory Cofactor Nhe-Rf, Nherf-1, Regulatory Cofactor Of Na+, H+, Exchanger, Solute Carrier Family 9 Isoform 3 Regulatory Factor 1; Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
symmetry	Space Group: P 21 21 21	R_factor 0.229 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.388 146.277 177.763 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G
Primary reference	Structural basis for NHERF recognition by ERM proteins., Terawaki S, Maesaki R, Hakoshima T, Structure. 2006 Apr;14(4):777-89. PMID:16615918

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk] Biological Unit Coordinates (2d10.pdb1.gz) 58 Kb Biological Unit Coordinates (2d10.pdb2.gz) 58 Kb Biological Unit Coordinates (2d10.pdb3.gz) 57 Kb Biological Unit Coordinates (2d10.pdb4.gz) 58 Kb CSU: Contacts of Structural Units for 2D10 Likely Quarternary Molecular Structure file(s) for 2D10 Structure Factors (533 Kb) Retrieve 2D10 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D10 from S2C, [Save to disk] Re-refined 2d10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D10 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D10

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2D10, from MSDmotif at EBI Fold representative 2d10 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d10_G] [2d10_D] [2d10] [2d10_A] [2d10_F] [2d10_B] [2d10_E] [2d10_H] [2d10_C] SWISS-PROT database: [O14745] [P26043] Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB. Domain organization of [NHRF1_HUMAN] [RADI_MOUSE] by SWISSPFAM Domains found in 2D10: [B41] [FERM_C ] by SMART

Other resources with information on 2D10

Community annotation for 2D10 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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