2D17 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 11 Modelsresolution
Primary referenceSolution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers., Baba S, Takahashi K, Noguchi S, Takaku H, Koyanagi Y, Yamamoto N, Kawai G, J Biochem (Tokyo). 2005 Nov;138(5):583-92. PMID:16272570
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (2d17.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2D17
  • Retrieve 2D17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D17 from S2C, [Save to disk]
  • View 2D17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D17, from MSDmotif at EBI
  • Fold representative 2d17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d17_A] [2d17_B] [2d17]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2D17
  • Community annotation for 2D17 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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