2D1I date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers., Kumanomidou T, Mizushima T, Komatsu M, Suzuki A, Tanida I, Sou YS, Ueno T, Kominami E, Tanaka K, Yamane T, J Mol Biol. 2006 Jan 27;355(4):612-8. Epub 2005 Nov 28. PMID:16325851
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (2d1i.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2d1i.pdb2.gz) 58 Kb
  • CSU: Contacts of Structural Units for 2D1I
  • Likely Quarternary Molecular Structure file(s) for 2D1I
  • Structure Factors (342 Kb)
  • Retrieve 2D1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D1I from S2C, [Save to disk]
  • Re-refined 2d1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d1i] [2d1i_A] [2d1i_B]
  • SWISS-PROT database: [Q9Y4P1]
  • Belongs to the autophagy-related phagophore-formation transporter (apt) family according to TCDB.

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