2D2I	Oxidoreductase	date	Sep 09, 2005
title	Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-Phospha Dehydrogenase From Synechococcus Sp. Complexed With Nadp+
authors	T.Kitatani, Y.Nakamura, K.Wada, T.Kinoshita, M.Tamoi, S.Shigeoka,
compound		source
Molecule: Glyceraldehyde 3-Phosphate Dehydrogenase Chain: A, B, O, P, Q, R Ec: 1.2.1.13 Engineered: Yes		Organism_scientific: Synechococcus Sp. Organism_taxid: 1131 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
symmetry	Space Group: C 1 2 1	R_factor 0.191 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 150.006 79.588 206.155 90.00 101.31 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	NAP, SO4	enzyme	Oxidoreductase E.C.1.2.1.13 BRENDA
Gene Ontology	Chain Function Process Component A, Q, O, R, P, B
Primary reference	Structure of NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Synechococcus PCC7942 complexed with NADP., Kitatani T, Nakamura Y, Wada K, Kinoshita T, Tamoi M, Shigeoka S, Tada T, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt, 4):315-9. Epub 2006 Mar 10. PMID:16582475

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk] Biological Unit Coordinates (2d2i.pdb1.gz) 221 Kb Biological Unit Coordinates (2d2i.pdb2.gz) 217 Kb LPC: Ligand-Protein Contacts for 2D2I CSU: Contacts of Structural Units for 2D2I Likely Quarternary Molecular Structure file(s) for 2D2I Structure Factors (575 Kb) Retrieve 2D2I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D2I from S2C, [Save to disk] Re-refined 2d2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2D2I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D2I, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d2i_P] [2d2i_B] [2d2i_Q] [2d2i_A] [2d2i_O] [2d2i] [2d2i_R] SWISS-PROT database: [Q55245] Domain organization of [Q55245_SYNSP] by SWISSPFAM Domain found in 2D2I: [Gp_dh_N ] by SMART

Other resources with information on 2D2I

Community annotation for 2D2I at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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