2D2P Hormone Growth Factor date Sep 14, 2005
title The Solution Structure Of Micelle-Bound Peptide
authors Y.Tateishi, J.G.Jee, H.Inooka, H.Tochio, H.Hiroaki, M.Shirakawa
compound source
Molecule: Pituitary Adenylate Cyclase Activating Polypeptide-38;
Chain: A
Synonym: Pacap-38, Pacap38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
methodSolution NMR
ligand NH2 enzyme
subcellular loc. Membrane localization by OPM: Secreted
out side
in side
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2D2P
  • CSU: Contacts of Structural Units for 2D2P
  • Original NMR restraints for 2D2P from PDB
  • Retrieve 2D2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D2P from S2C, [Save to disk]
  • View 2D2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D2P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D2P, from MSDmotif at EBI
  • Fold representative 2d2p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d2p] [2d2p_A]
  • SWISS-PROT database: [P18509]
  • Domain organization of [PACA_HUMAN] by SWISSPFAM
  • Domain found in 2D2P: [GLUCA ] by SMART
  • Alignments of the sequence of 2D2P with the sequences similar proteins can be viewed for 2D2P's classification [PACA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PACA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2D2P
  • Community annotation for 2D2P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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