2D39 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA enzyme
note 2D39 is a representative structure
Primary referenceTrivalent Recognition Unit of Innate Immunity System: CRYSTAL STRUCTURE OF TRIMERIC HUMAN M-FICOLIN FIBRINOGEN-LIKE DOMAIN., Tanio M, Kondo S, Sugio S, Kohno T, J Biol Chem. 2007 Feb 9;282(6):3889-95. Epub 2006 Dec 4. PMID:17148457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2d39.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2D39
  • CSU: Contacts of Structural Units for 2D39
  • Likely Quarternary Molecular Structure file(s) for 2D39
  • Structure Factors (437 Kb)
  • Retrieve 2D39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D39 from S2C, [Save to disk]
  • Re-refined 2d39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d39] [2d39_A] [2d39_B] [2d39_C]
  • SWISS-PROT database: [O00602]
  • Domain found in 2D39: [FBG ] by SMART

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