2D3D		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CA	enzyme
note	2D3D is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	The NMR and X-ray Structures of the Saccharomyces cerevisiae Vts1 SAM Domain Define a Surface for the Recognition of RNA Hairpins., Aviv T, Amborski AN, Zhao XS, Kwan JJ, Johnson PE, Sicheri F, Donaldson LW, J Mol Biol. 2006 Feb 17;356(2):274-9. Epub 2005 Dec 7. PMID:16375924

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (2d3d.pdb1.gz) 30 Kb LPC: Ligand-Protein Contacts for 2D3D CSU: Contacts of Structural Units for 2D3D Likely Quarternary Molecular Structure file(s) for 2D3D Structure Factors (69 Kb) Retrieve 2D3D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D3D from S2C, [Save to disk] Re-refined 2d3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D3D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d3d] [2d3d_A] SWISS-PROT database: [Q08831] Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB. Domain found in 2D3D: [SAM ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---