2D3J Signaling Protein Inhibitor date Sep 29, 2005
title Nmr Structure Of The Wif Domain From Human Wif-1
authors E.Liepinsh, L.Banyai, L.Patthy, G.Otting
compound source
Molecule: Wnt Inhibitory Factor-1
Chain: A
Fragment: Wif Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
Primary referenceNMR structure of the WIF domain of the human Wnt-inhibitory factor-1., Liepinsh E, Banyai L, Patthy L, Otting G, J Mol Biol. 2006 Mar 31;357(3):942-50. Epub 2006 Jan 31. PMID:16476441
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (820 Kb) [Save to disk]
  • Biological Unit Coordinates (2d3j.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 2D3J
  • Original NMR restraints for 2D3J from PDB
  • Retrieve 2D3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D3J from S2C, [Save to disk]
    • View 2D3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D3J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D3J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d3j_A] [2d3j]
  • SWISS-PROT database: [Q9Y5W5]
  • Domain organization of [WIF1_HUMAN] by SWISSPFAM
  • Domain found in 2D3J: [WIF ] by SMART
    • Other resources with information on 2D3J
  • Community annotation for 2D3J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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