2D45 Transcription Dna date Oct 09, 2005
title Crystal Structure Of The Meci-Meca Repressor-Operator Comple
authors M.K.Safo, T.P.Ko, F.N.Musayev, Q.Zhao, A.H.J.Wang, G.L.Archer
compound source
Molecule: 5'-D(Ptpapcptpapcpaptpaptpgptpapgp
Chain: E, F, G, H
Engineered: Yes
Synthetic: Yes

Molecule: Methicillin Resistance Regulatory Protein Meci
Chain: A, B, C, D
Engineered: Yes

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Meci
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3
symmetry Space Group: P 32 1 2
R_factor 0.264 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.464 61.464 419.777 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.80 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the MecI repressor from Staphylococcus aureus in complex with the cognate DNA operator of mec., Safo MK, Ko TP, Musayev FN, Zhao Q, Wang AH, Archer GL, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt, 4):320-4. Epub 2006 Mar 25. PMID:16582476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2d45.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2D45
  • CSU: Contacts of Structural Units for 2D45
  • Likely Quarternary Molecular Structure file(s) for 2D45
  • Structure Factors (102 Kb)
  • Retrieve 2D45 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D45 from S2C, [Save to disk]
  • Re-refined 2d45 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2D45 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D45
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D45, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d45_A] [2d45] [2d45_G] [2d45_E] [2d45_B] [2d45_D] [2d45_F] [2d45_H] [2d45_C]
  • SWISS-PROT database: [P68261]
  • Domain organization of [MECI_STAAN] by SWISSPFAM
  • Other resources with information on 2D45
  • Community annotation for 2D45 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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