2D5D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceProtein biotinylation visualized by a complex structure of biotin protein ligase with a substrate., Bagautdinov B, Matsuura Y, Bagautdinova S, Kunishima N, J Biol Chem. 2008 May 23;283(21):14739-50. Epub 2008 Mar 26. PMID:18372281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (2d5d.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (2d5d.pdb2.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2D5D
  • Likely Quarternary Molecular Structure file(s) for 2D5D
  • Structure Factors (155 Kb)
  • Retrieve 2D5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D5D from S2C, [Save to disk]
  • Re-refined 2d5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d5d] [2d5d_A] [2d5d_B]
  • SWISS-PROT database: [O59021]

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