2D5F		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CO3, CSD, MG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Conservation and divergence on plant seed 11S globulins based on crystal structures., Tandang-Silvas MR, Fukuda T, Fukuda C, Prak K, Cabanos C, Kimura A, Itoh T, Mikami B, Utsumi S, Maruyama N, Biochim Biophys Acta. 2010 Mar 6. PMID:20215054

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (2d5f.pdb1.gz) 387 Kb LPC: Ligand-Protein Contacts for 2D5F CSU: Contacts of Structural Units for 2D5F Likely Quarternary Molecular Structure file(s) for 2D5F Structure Factors (535 Kb) Retrieve 2D5F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D5F from S2C, [Save to disk] Re-refined 2d5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D5F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d5f_B] [2d5f] [2d5f_A] SWISS-PROT database: [Q7GC77] Domain found in 2D5F: [Cupin_1 ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---