2D8I Immune System, Signaling Protein date Dec 06, 2005
title Solution Structure Of The Pdz Domain Of T-Cell Lymphoma Invasion And Metastasis 1 Varian
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: T-Cell Lymphoma Invasion And Metastasis 1 Variant;
Chain: A
Fragment: Pdz Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: T1am-1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050425-07
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (563 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2D8I
  • Original NMR restraints for 2D8I from PDB
  • Retrieve 2D8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D8I from S2C, [Save to disk]
  • View 2D8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D8I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D8I, from MSDmotif at EBI
  • Fold representative 2d8i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d8i] [2d8i_A]
  • SWISS-PROT database: [Q13009]
  • Domain organization of [TIAM1_HUMAN] by SWISSPFAM
  • Domain found in 2D8I: [PDZ ] by SMART
  • Other resources with information on 2D8I
  • Community annotation for 2D8I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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