2D8N Metal Binding Protein date Dec 07, 2005
title Crystal Structure Of Human Recoverin At 2.2 A Resolution
authors S.Kamo, S.Kishishita, K.Murayama, M.Shirouzu, S.Yokoyama, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Recoverin
Chain: A
Synonym: Cancer Associated Retinopathy Protein, Car Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px050309-02
Other_details: Cell Free System
symmetry Space Group: I 4
R_factor 0.189 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.034 85.034 65.689 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium sensitive guanylate ...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2d8n.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (2d8n.pdb2.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 2D8N
  • CSU: Contacts of Structural Units for 2D8N
  • Likely Quarternary Molecular Structure file(s) for 2D8N
  • Structure Factors (189 Kb)
  • Retrieve 2D8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D8N from S2C, [Save to disk]
  • Re-refined 2d8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2D8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D8N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D8N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d8n_A] [2d8n]
  • SWISS-PROT database: [P35243]
  • Domain organization of [RECO_HUMAN] by SWISSPFAM
  • Domain found in 2D8N: [EFh ] by SMART
    • Other resources with information on 2D8N
  • Community annotation for 2D8N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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