2D8Y Structural Protein date Dec 08, 2005
title Solution Structure Of The Lim Domain Of Epithelial Protein Lost In Neoplasm
authors X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Eplin Protein
Chain: A
Fragment: Lim Domain
Synonym: Epithelial Protein Lost In Neoplasm
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eplin
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-11
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2D8Y
  • CSU: Contacts of Structural Units for 2D8Y
  • Original NMR restraints for 2D8Y from PDB
  • Retrieve 2D8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D8Y from S2C, [Save to disk]
  • View 2D8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D8Y, from MSDmotif at EBI
  • Fold representative 2d8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d8y_A] [2d8y]
  • SWISS-PROT database: [Q9UHB6]
  • Domain organization of [LIMA1_HUMAN] by SWISSPFAM
  • Domain found in 2D8Y: [LIM ] by SMART
  • Other resources with information on 2D8Y
  • Community annotation for 2D8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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