2D9G Transcription date Dec 09, 2005
title Solution Structure Of The Zf-Ranbp Domain Of Yy1-Associated
authors H.P.Zhang, K.Izumi, M.Yoshida, F.Hayashi, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Yy1-Associated Factor 2
Chain: A
Fragment: Zf-Ranbp Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Yaf2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050322-12
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (2d9g.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2D9G
  • CSU: Contacts of Structural Units for 2D9G
  • Retrieve 2D9G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D9G from S2C, [Save to disk]
  • View 2D9G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D9G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D9G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d9g] [2d9g_A]
  • SWISS-PROT database: [Q8IY57]
  • Domain organization of [YAF2_HUMAN] by SWISSPFAM
  • Domain found in 2D9G: [ZnF_RBZ ] by SMART
  • Other resources with information on 2D9G
  • Community annotation for 2D9G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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