2D9L Gene Regulation date Dec 11, 2005
title Solution Structure Of The Arfgap Domain Of Human Rip
authors T.Suetake, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nucleoporin-Like Protein Rip
Chain: A
Fragment: Arfgap Domain
Synonym: Hiv-1 Rev-Binding Protein, Rev Interacting Protein, Revrex Activation Domain-Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hrb
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-26
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (703 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2D9L
  • CSU: Contacts of Structural Units for 2D9L
  • Retrieve 2D9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D9L from S2C, [Save to disk]
  • View 2D9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D9L, from MSDmotif at EBI
  • Fold representative 2d9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d9l] [2d9l_A]
  • SWISS-PROT database: [P52594]
  • Domain organization of [AGFG1_HUMAN] by SWISSPFAM
  • Domain found in 2D9L: [ArfGap ] by SMART
  • Other resources with information on 2D9L
  • Community annotation for 2D9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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