2D9N Rna Binding Protein date Dec 12, 2005
title Solution Structure Of Ccch Type Zinc-Finger Domain 2 In Clea Polyadenylation Specificity Factor
authors C.Abe, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor, Subunit;
Chain: A
Fragment: Ccch-Type Zinc Finger Motif
Synonym: Cpsf 30 Kda Subunit, Ns1 Effector Domain-Binding P Neb-1, No Arches Homolog;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-51
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (2d9n.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2D9N
  • CSU: Contacts of Structural Units for 2D9N
  • Retrieve 2D9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D9N from S2C, [Save to disk]
    • View 2D9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D9N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D9N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d9n] [2d9n_A]
  • SWISS-PROT database: [O95639]
  • Domain organization of [CPSF4_HUMAN] by SWISSPFAM
  • Domain found in 2D9N: [ZnF_C3H1 ] by SMART
    • Other resources with information on 2D9N
  • Community annotation for 2D9N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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