2DA2 Transcription date Dec 13, 2005
title Solution Structure Of The Second Homeobox Domain Of At- Binding Transcription Factor 1 (Atbf1)
authors S.Ohnishi, T.Kigawa, N.Tochio, S.Koshiba, M.Inoue, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Alpha-Fetoprotein Enhancer Binding Protein
Chain: A
Fragment: The Second Homeobox Domain
Synonym: At Motif-Binding Factor, At-Binding Transcription Factor 1, Atbf1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atbf1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050620-20
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DA2
  • Retrieve 2DA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DA2 from S2C, [Save to disk]
  • View 2DA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DA2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DA2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k2da2, region A:1-81 [Jmol] [rasmolscript] [script source]
        - Domain d1t2da2, region A:151-315 [Jmol] [rasmolscript] [script source]
        - Domain d1i2da2, region A:171-390 [Jmol] [rasmolscript] [script source]
        - Domain d1l2da2, region A:2-134 [Jmol] [rasmolscript] [script source]
  • Fold representative 2da2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2da2_A] [2da2]
  • SWISS-PROT database: [Q15911]
  • Domain organization of [ZFHX3_HUMAN] by SWISSPFAM
  • Domain found in 2DA2: [HOX ] by SMART
  • Other resources with information on 2DA2
  • Community annotation for 2DA2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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