2DAK Hydrolase date Dec 14, 2005
title Solution Structure Of The Second Uba Domain In The Human Ubi Specific Protease 5 (Isopeptidase 5)
authors C.Zhao, T.Kigawa, M.Sato, S.Koshiba, M.Inoue, S.Yokoyama, Riken St Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 5
Chain: A
Fragment: Uba Domain
Synonym: Ubiquitin Thiolesterase 5, Ubiquitin-Specific Proc Protease 5, Deubiquitinating Enzyme 5, Isopeptidase T;
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp5
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050704-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.2.15 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (2dak.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2DAK
  • Retrieve 2DAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DAK from S2C, [Save to disk]
  • View 2DAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DAK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DAK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dak_A] [2dak]
  • SWISS-PROT database: [P45974]
  • Domain organization of [UBP5_HUMAN] by SWISSPFAM
  • Domain found in 2DAK: [UBA ] by SMART
  • Other resources with information on 2DAK
  • Community annotation for 2DAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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