2DAO Dna Binding Protein date Dec 14, 2005
title Solution Structure Of Ets Domain Transcriptional Factor Etv6 Protein
authors T.N.Niraula, A.Sasagawa, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Transcription Factor Etv6
Chain: A
Fragment: Ets Domain
Synonym: Ets-Related Protein Tel1, Tel, Ets Translocation Variant 6;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Etv6
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050516-14
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (653 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DAO
  • Original NMR restraints for 2DAO from PDB
  • Retrieve 2DAO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DAO from S2C, [Save to disk]
  • View 2DAO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DAO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DAO, from MSDmotif at EBI
  • Fold representative 2dao from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dao] [2dao_A]
  • SWISS-PROT database: [P41212]
  • Domain organization of [ETV6_HUMAN] by SWISSPFAM
  • Domain found in 2DAO: [ETS ] by SMART
  • Other resources with information on 2DAO
  • Community annotation for 2DAO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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