2DB8 Protein Binding date Dec 15, 2005
title Solution Structures Of The Fn3 Domain Of Human Tripartite Mo Protein 9
authors M.Sato, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structura Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tripartite Motif Protein 9, Isoform 2
Chain: A
Fragment: Fibronectin Type III Domain
Synonym: Tripartite Motif Protein 9
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim9
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040921-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (2db8.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2DB8
  • Original NMR restraints for 2DB8 from PDB
  • Retrieve 2DB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DB8 from S2C, [Save to disk]
    • View 2DB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DB8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DB8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2db8_A] [2db8]
  • SWISS-PROT database: [Q9C026]
  • Domain organization of [TRIM9_HUMAN] by SWISSPFAM
  • Domain found in 2DB8: [FN3 ] by SMART
    • Other resources with information on 2DB8
  • Community annotation for 2DB8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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