2DBD Signaling Protein date Dec 15, 2005
title Solution Structure Of The Card Domain In Human Caspase Recru Domain Protein 4 (Nod1 Protein)
authors K.Saito, M.Inoue, S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structur Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Caspase Recruitment Domain Protein 4
Chain: A
Fragment: Card Domain
Synonym: Card4, Nod1 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bc1621_h11
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050613-13
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene BC1621
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (553 Kb) [Save to disk]
  • Biological Unit Coordinates (2dbd.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2DBD
  • Retrieve 2DBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DBD from S2C, [Save to disk]
    • View 2DBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DBD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DBD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dbd] [2dbd_A]
  • SWISS-PROT database: [Q9Y239]
  • Domain organization of [NOD1_HUMAN] by SWISSPFAM
  • Domain found in 2DBD: [CARD ] by SMART
    • Other resources with information on 2DBD
  • Community annotation for 2DBD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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