2DBF Signaling Protein date Dec 15, 2005
title Solution Structure Of The Death Domain In Human Nuclear Factor Nf-Kappa-B P105 Subunit
authors K.Saito, M.Inoue, S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nuclear Factor Nf-Kappa-B P105 Subunit
Chain: A
Fragment: Death Domain
Synonym: Kbf1, Dna-Binding Factor Kbf1, Ebp- 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pr1117_g03
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050613-15
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene PR1117

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (498 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DBF
  • Retrieve 2DBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DBF from S2C, [Save to disk]
  • View 2DBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DBF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DBF, from MSDmotif at EBI
  • Fold representative 2dbf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dbf_A] [2dbf]
  • SWISS-PROT database: [P19838]
  • Domain organization of [NFKB1_HUMAN] by SWISSPFAM
  • Domain found in 2DBF: [DEATH ] by SMART
  • Other resources with information on 2DBF
  • Community annotation for 2DBF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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