2DBG Immune System date Dec 15, 2005
title Solution Structure Of The Pyrin (Paad-Dapin) Domain In Human Cell Nuclear Differentiation Antigen
authors K.Saito, M.Inoue, S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structur Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Myeloid Cell Nuclear Differentiation Antigen
Chain: A
Fragment: Pyrin Domain
Synonym: Mnda
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ab1735_e12
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050613-16
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene AB1735
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (550 Kb) [Save to disk]
  • Biological Unit Coordinates (2dbg.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2DBG
  • Retrieve 2DBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DBG from S2C, [Save to disk]
    • View 2DBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DBG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DBG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dbg_A] [2dbg]
  • SWISS-PROT database: [P41218]
  • Domain organization of [MNDA_HUMAN] by SWISSPFAM
  • Domain found in 2DBG: [PYRIN ] by SMART
    • Other resources with information on 2DBG
  • Community annotation for 2DBG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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