2DBJ Transferase, Signaling Protein date Dec 15, 2005
title Solution Structures Of The Fn3 Domain Of Human Proto-Oncogen Tyrosine-Protein Kinase Mer Precursor
authors M.Sato, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Mer Precur
Chain: A
Fragment: Fibronectin Type III Domain
Synonym: C-Mer, Receptor Tyrosine Kinase Mertk
Ec: 2.7.1.112
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mertk
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050314-04
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (610 Kb) [Save to disk]
  • Biological Unit Coordinates (2dbj.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2DBJ
  • Original NMR restraints for 2DBJ from PDB
  • Retrieve 2DBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DBJ from S2C, [Save to disk]
    • View 2DBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DBJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dbj] [2dbj_A]
  • SWISS-PROT database: [Q12866]
  • Domain organization of [MERTK_HUMAN] by SWISSPFAM
  • Domain found in 2DBJ: [FN3 ] by SMART
    • Other resources with information on 2DBJ
  • Community annotation for 2DBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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