2DCE Structural Genomics, Unknown Function date Jan 06, 2006
title Solution Structure Of The Swirm Domain Of Human Kiaa1915 Protein
authors M.Yoneyama, N.Tochio, T.Umehara, S.Koshiba, M.Inoue, A.Tanaka, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Kiaa1915 Protein
Chain: A
Fragment: Swirm Domain, Residues 8-111
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1915
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041018-14
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Functional Differences of SWIRM Domain Subtypes., Yoneyama M, Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Watanabe S, Tomo Y, Nishimura Y, Harada T, Terada T, Shirouzu M, Hayashizaki Y, Ohara O, Tanaka A, Kigawa T, Yokoyama S, J Mol Biol. 2007 May 25;369(1):222-38. Epub 2007 Mar 19. PMID:17428495
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DCE
  • Retrieve 2DCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DCE from S2C, [Save to disk]
  • View 2DCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DCE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DCE, from MSDmotif at EBI
  • Fold representative 2dce from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dce] [2dce_A]
  • SWISS-PROT database: [Q5VVJ2]
  • Domain organization of [MYSM1_HUMAN] by SWISSPFAM
  • Other resources with information on 2DCE
  • Community annotation for 2DCE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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