2DD4	Hydrolase	date	Jan 19, 2006
title	Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus R Apo-Enzyme
authors	T.Arakawa, Y.Kawano, S.Kataoka, Y.Katayama, N.Kamiya, M.Yohda, M.O
compound		source
Molecule: Thiocyanate Hydrolase Alpha Subunit Chain: A, D, G, J Synonym: Scnase Alpha Subunit Ec: 3.5.5.8 Engineered: Yes		Organism_scientific: Thiobacillus Thioparus Organism_taxid: 931 Strain: Thi115 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
Molecule: Thiocyanate Hydrolase Beta Subunit Chain: B, E, H, K Synonym: Scnase Beta Subunit Ec: 3.5.5.8 Engineered: Yes		Organism_scientific: Thiobacillus Thioparus Organism_taxid: 931 Strain: Thi115 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
Molecule: Thiocyanate Hydrolase Gamma Subunit Chain: C, F, I, L Synonym: Scnase Gamma Subunit Ec: 3.5.5.8 Engineered: Yes		Organism_scientific: Thiobacillus Thioparus Organism_taxid: 931 Strain: Thi115 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
symmetry	Space Group: P 21 21 21	R_factor 0.165 R_Free 0.193
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.307 175.602 114.791 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.06 Å
ligand	FRU, TLA	enzyme	Hydrolase E.C.3.5.5.8 BRENDA
Gene Ontology	Chain Function Process Component A, J, K, E, B, H, D, G F, C, I, L
Primary reference	Structure of Thiocyanate Hydrolase: A New Nitrile Hydratase Family Protein with a Novel Five-coordinate Cobalt(III) Center., Arakawa T, Kawano Y, Kataoka S, Katayama Y, Kamiya N, Yohda M, Odaka M, J Mol Biol. 2006 Dec 8;. PMID:17222425

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk] Biological Unit Coordinates (2dd4.pdb1.gz) 353 Kb LPC: Ligand-Protein Contacts for 2DD4 CSU: Contacts of Structural Units for 2DD4 Likely Quarternary Molecular Structure file(s) for 2DD4 Structure Factors (1637 Kb) Retrieve 2DD4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DD4 from S2C, [Save to disk] Re-refined 2dd4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DD4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DD4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DD4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dd4_A] [2dd4_F] [2dd4_B] [2dd4_D] [2dd4_H] [2dd4_J] [2dd4_I] [2dd4_G] [2dd4] [2dd4_C] [2dd4_E] [2dd4_K] [2dd4_L] SWISS-PROT database: [O66187] [O66186] [O66188] Domain organization of [SCNA_THITI] [SCNB_THITI] [SCNC_THITI] by SWISSPFAM

Other resources with information on 2DD4

Community annotation for 2DD4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---