2DD8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG, PO4 enzyme
Primary referenceStructure of severe acute respiratory syndrome coronavirus receptor-binding domain complexed with neutralizing antibody., Prabakaran P, Gan J, Feng Y, Zhu Z, Choudhry V, Xiao X, Ji X, Dimitrov DS, J Biol Chem. 2006 Jun 9;281(23):15829-36. Epub 2006 Apr 5. PMID:16597622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2dd8.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (2dd8.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2DD8
  • CSU: Contacts of Structural Units for 2DD8
  • Likely Quarternary Molecular Structure file(s) for 2DD8
  • Structure Factors (399 Kb)
  • Retrieve 2DD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DD8 from S2C, [Save to disk]
  • Re-refined 2dd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dd8] [2dd8_H] [2dd8_L] [2dd8_S]
  • SWISS-PROT database: [P59594]
  • Domains found in 2DD8: [IG_like] [IGv ] by SMART

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