2DEZ Neuropeptide date Feb 20, 2006
title Structure Of Human Pyy
authors R.Nygaard
compound source
Molecule: Peptide Yy
Chain: A
Fragment: Peptide Yy
Synonym: Polypeptide Yy, Pyy, Pyy-I, Peptide Tyrosine Tyros
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.; T Protein Synthesized By Solid State Peptide Synthesis.
methodSolution NMR
ligand NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe PP-Fold Solution Structure of Human Polypeptide YY and Human PYY3-36 As Determined by NMR(,)., Nygaard R, Nielbo S, Schwartz TW, Poulsen FM, Biochemistry. 2006 Jul 11;45(27):8350-8357. PMID:16819834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (2dez.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2DEZ
  • CSU: Contacts of Structural Units for 2DEZ
  • Original NMR restraints for 2DEZ from PDB
  • Retrieve 2DEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DEZ from S2C, [Save to disk]
  • View 2DEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DEZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DEZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dez] [2dez_A]
  • SWISS-PROT database: [P10082]
  • Domain organization of [PYY_HUMAN] by SWISSPFAM
  • Domain found in 2DEZ: [PAH ] by SMART
  • Other resources with information on 2DEZ
  • Community annotation for 2DEZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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