OCA Atlas for 2DF7

2DF7

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, CL

enzyme

Gene
Ontology

Chain	Function	Process	Component
L, A, O, M, F, H, Q, S, P, J, B, G, D, C, K, E, R, N, I, T

Primary reference

Crystal structure of infectious bursal disease virus VP2 subviral particle at 2.6A resolution: Implications in virion assembly and immunogenicity., Lee CC, Ko TP, Chou CC, Yoshimura M, Doong SR, Wang MY, Wang AH, J Struct Biol. 2006 Jul;155(1):74-86. Epub 2006 Mar 31. PMID:16677827

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1332 Kb) [Save to disk]

Biological Unit Coordinates (2df7.pdb1.gz) 3925 Kb

LPC: Ligand-Protein Contacts for 2DF7

CSU: Contacts of Structural Units for 2DF7

Likely Quarternary Molecular Structure file(s) for 2DF7

Structure Factors (3015 Kb)

Retrieve 2DF7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DF7 from S2C, [Save to disk]

Re-refined 2df7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DF7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2df7_O] [2df7_P] [2df7_Q] [2df7_R] [2df7_S] [2df7_T] [2df7] [2df7_A] [2df7_B] [2df7_C] [2df7_D] [2df7_E] [2df7_F] [2df7_G] [2df7_H] [2df7_I] [2df7_J] [2df7_K] [2df7_L] [2df7_M] [2df7_N]

SWISS-PROT database: [Q9WR38]

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