2DFS Contractile Protein Transport Protein date Mar 03, 2006
title 3-D Structure Of Myosin-V Inhibited State
authors J.Liu, D.W.Taylor, E.B.Krementsova, K.M.Trybus, K.A.Taylor
compound source
Molecule: Myosin-5a
Chain: A, M
Fragment: Residues 1-1080
Synonym: Myosin Va, Dilute Myosin Heavy Chain, Non-Muscle, Heavy Chain P190, Myosin-V;
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl1392 (Invitrogen)

Molecule: Calmodulin
Chain: B, C, D, E, F, G, N, O, P, Q, R, S
Synonym: Cam
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl1392 (Invitrogen)
symmetry Space Group: P 6
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
653.000 653.000 200.000 90.00 90.00 120.00
method Electron Crystallographyresolution 24.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, M


S, F, O, N, P, E, B, Q, C, D, R, G


Primary referenceThree-dimensional structure of the myosin V inhibited state by cryoelectron tomography., Liu J, Taylor DW, Krementsova EB, Trybus KM, Taylor KA, Nature. 2006 Jul 13;442(7099):208-11. Epub 2006 Apr 16. PMID:16625208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (516 Kb) [Save to disk]
  • Biological Unit Coordinates (2dfs.pdb1.gz) 508 Kb
  • CSU: Contacts of Structural Units for 2DFS
  • Likely Quarternary Molecular Structure file(s) for 2DFS
  • Retrieve 2DFS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DFS from S2C, [Save to disk]
  • View 2DFS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DFS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DFS, from MSDmotif at EBI
  • Fold representative 2dfs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dfs_N] [2dfs_B] [2dfs_S] [2dfs_P] [2dfs_D] [2dfs_A] [2dfs] [2dfs_R] [2dfs_E] [2dfs_G] [2dfs_F] [2dfs_Q] [2dfs_M] [2dfs_C] [2dfs_O]
  • SWISS-PROT database: [P62204] [Q02440]
  • Domain organization of [CALM_MOUSE] [MYO5A_CHICK] by SWISSPFAM
  • Domains found in 2DFS: [EFh] [IQ] [MYSc ] by SMART
  • Other resources with information on 2DFS
  • Community annotation for 2DFS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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