2DGU Rna Binding Protein date Mar 15, 2006
title Solution Structure Of The Rna Binding Domain In Heterogeneou Ribonucleoprotein Q
authors C.Abe, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Heterogeneous Nuclear Ribonucleoprotein Q
Chain: A
Fragment: Rna Recognition Motif
Synonym: Hnrnp Q, Hnrnp-Q, Synaptotagmin-Binding, Cytoplasm Interacting Protein, Glycine- And Tyrosine-Rich Rna-Binding Gry-Rbp, Ns1-Associated Protein 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Syncrip
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051017-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (544 Kb) [Save to disk]
  • Biological Unit Coordinates (2dgu.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2DGU
  • Retrieve 2DGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DGU from S2C, [Save to disk]
    • View 2DGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DGU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DGU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dgu_A] [2dgu]
  • SWISS-PROT database: [O60506]
  • Domain organization of [HNRPQ_HUMAN] by SWISSPFAM
  • Domain found in 2DGU: [RRM ] by SMART
    • Other resources with information on 2DGU
  • Community annotation for 2DGU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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