2DGX Rna Binding Protein date Mar 16, 2006
title Solution Structure Of The Rna Recognition Motif In Kiaa0430
authors C.Abe, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Kiaa0430 Protein
Chain: A
Fragment: Rna Recognition Motif
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0430
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050822-19
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (483 Kb) [Save to disk]
  • Biological Unit Coordinates (2dgx.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2DGX
  • Retrieve 2DGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DGX from S2C, [Save to disk]
    • View 2DGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DGX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DGX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dgx] [2dgx_A]
  • SWISS-PROT database: [Q9Y4F3]
  • Domain organization of [LKAP_HUMAN] by SWISSPFAM
  • Domain found in 2DGX: [RRM ] by SMART
    • Other resources with information on 2DGX
  • Community annotation for 2DGX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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