OCA Atlas for 2DHM

2DHM

Protein Binding

date

Mar 24, 2006

title

Solution Structure Of The Bola Protein From Escherichia Coli

authors

T.Kasai, T.Kigawa, S.Koshiba, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)

compound

source

Molecule: Protein Bola
Chain: A
Fragment: Residues 1-100
Engineered: Yes

Organism_scientific: Escherichia Coli Str. K12 Substr.
Organism_taxid: 316407
Strain: W3110
Gene: Bola
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcr2.1
Other_details: Cell-Free Protein Synthesis

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (551 Kb) [Save to disk]

Biological Unit Coordinates (2dhm.pdb1.gz) 28 Kb

CSU: Contacts of Structural Units for 2DHM

Retrieve 2DHM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DHM from S2C, [Save to disk]

View 2DHM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DHM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2DHM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dhm_A] [2dhm]

SWISS-PROT database: [P0ABE2]

Domain organization of [BOLA_ECOLI] by SWISSPFAM

Other resources with information on 2DHM

Community annotation for 2DHM at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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