2DIF Protein Binding date Mar 29, 2006
title One Sequence Two Fold ? : Miss Fold Of The Zf-B-Box Domain F Tripartite Motif Protein 39
authors T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tripartite Motif Protein 39
Chain: A
Fragment: Zf-B-Box Domain
Synonym: Ring Finger Protein 23, Testis-Abundant Finger Pro
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim39
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-55
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (2dif.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2DIF
  • CSU: Contacts of Structural Units for 2DIF
  • Original NMR restraints for 2DIF from PDB
  • Retrieve 2DIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DIF from S2C, [Save to disk]
    • View 2DIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DIF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DIF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dif] [2dif_A]
  • SWISS-PROT database: [Q9HCM9]
  • Domain organization of [TRI39_HUMAN] by SWISSPFAM
  • Domain found in 2DIF: [BBOX ] by SMART
    • Other resources with information on 2DIF
  • Community annotation for 2DIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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