2DII Transcription date Mar 30, 2006
title Solution Structure Of The Bsd Domain Of Human Tfiih Basal Transcription Factor Complex P62 Subunit
authors M.Yoneyama, N.Tochio, S.Koshiba, S.Watabe, T.Harada, T.Kigawa, S.Y Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tfiih Basal Transcription Factor Complex P62 Subu
Chain: A
Fragment: Bsd Domain
Synonym: Basic Transcription Factor 62 Kda Subunit, Btf2-P6 Transcription Factor Iih Polypeptide 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2h1, Btf2
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051212-11
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 2DII is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (2dii.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2DII
  • Retrieve 2DII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DII from S2C, [Save to disk]
    • View 2DII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DII
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DII, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dii_A] [2dii]
  • SWISS-PROT database: [P32780]
  • Domain organization of [TF2H1_HUMAN] by SWISSPFAM
  • Domain found in 2DII: [BSD ] by SMART
    • Other resources with information on 2DII
  • Community annotation for 2DII at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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