2DIL Cell Adhesion date Mar 30, 2006
title Solution Structure Of The Sh3 Domain Of The Human Proline-Se Threonine Phosphatase-Interacting Protein 1
authors M.Yoneyama, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Ri Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Proline-Serine-Threonine Phosphatase-Interacting
Chain: A
Fragment: Sh3 Domain
Synonym: Pest Phosphatase-Interacting Protein 1, Cd2-Bindin 1, H-Pip;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pstpip1, Cd2bp1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050919-13
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk]
  • Biological Unit Coordinates (2dil.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 2DIL
  • Retrieve 2DIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DIL from S2C, [Save to disk]
    • View 2DIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DIL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DIL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dil_A] [2dil]
  • SWISS-PROT database: [O43586]
  • Domain organization of [PPIP1_HUMAN] by SWISSPFAM
  • Domain found in 2DIL: [SH3 ] by SMART
    • Other resources with information on 2DIL
  • Community annotation for 2DIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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