2DIR Rna Binding Protein date Mar 30, 2006
title Solution Structure Of The Thump Domain Of Thump Domain-Conta Protein 1
authors W.Dang, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyam Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Thump Domain-Containing Protein 1
Chain: A
Fragment: Thump Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thumpd1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050905-19
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]
  • Biological Unit Coordinates (2dir.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2DIR
  • Original NMR restraints for 2DIR from PDB
  • Retrieve 2DIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DIR from S2C, [Save to disk]
    • View 2DIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DIR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DIR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dir] [2dir_A]
  • SWISS-PROT database: [Q9NXG2]
  • Domain organization of [THUM1_HUMAN] by SWISSPFAM
  • Domain found in 2DIR: [THUMP ] by SMART
    • Other resources with information on 2DIR
  • Community annotation for 2DIR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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