2DIZ Electron Transport date Mar 30, 2006
title The Solution Structure Of The Third Thioredoxin Domain Of Hu Thioredoxin Domain-Containing Protein 5
authors N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structu Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Thioredoxin Domain-Containing Protein 5
Chain: A
Fragment: 3rd Thioredoxin Domain
Synonym: Thioredoxin-Like Protein P46, Endoplasmic Reticulu Erp46;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Txndc5
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-28
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (597 Kb) [Save to disk]
  • Biological Unit Coordinates (2diz.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2DIZ
  • Original NMR restraints for 2DIZ from PDB
  • Retrieve 2DIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DIZ from S2C, [Save to disk]
  • View 2DIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DIZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DIZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2diz] [2diz_A]
  • SWISS-PROT database: [Q8NBS9]
  • Domain organization of [TXND5_HUMAN] by SWISSPFAM
  • Other resources with information on 2DIZ
  • Community annotation for 2DIZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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