2DJR Metal Binding Protein date Apr 05, 2006
title Solution Structures Of The C2h2 Type Zinc Finger Domain Of H Finger Bed Domain Containing Protein 2
authors M.Sato, A.Sasagawa, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yoko Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger Bed Domain-Containing Protein 2
Chain: A
Fragment: C2h2 Type Zinc Finger Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zbed2
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-53
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • Biological Unit Coordinates (2djr.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2DJR
  • CSU: Contacts of Structural Units for 2DJR
  • Original NMR restraints for 2DJR from PDB
  • Retrieve 2DJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DJR from S2C, [Save to disk]
    • View 2DJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DJR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DJR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2djr] [2djr_A]
  • SWISS-PROT database: [Q9BTP6]
  • Domain organization of [ZBED2_HUMAN] by SWISSPFAM
  • Domain found in 2DJR: [ZnF_BED ] by SMART
    • Other resources with information on 2DJR
  • Community annotation for 2DJR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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